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This study is the first systematic assessment of the Lower Ordovician microbial carbonates in Songzi, Hubei Province, China. This paper divides the microbial carbonates into two types according to growth patterns, namely nongranular and granular. The nongranular types include stromatolites, thrombolites, dendrolites, leiolites and laminites; the granular types are mainly oncolites and may include a small amount of microbiogenic oolite. According to their geometric features, the stromatolites can be divided into four types: stratiform, wavy, columnar and domal. Additionally, dipyramidal columnar stromatolites are identified for the first time and represent a new type of columnar stromatolite. The thrombolites are divided into three types: speckled, reticulated and banded. The grazing gastropod Ecculiomphalus and traces of bioturbation are observed in the speckled and reticulated thrombolites. This paper considers these two kinds of thrombolites to represent bioturbated thrombolites. These findings not only fill gaps in the field of domestic Ordovician bioturbated thrombolites but also provide new information for the study of thrombolites. Based on the analysis of the sedimentary characteristics of microbialites, the depositional environments of the various types of microbialites are described, and the distribution patterns of their depositional environments are summarized. The relationship between the development of microbialites and the evolution and radiation of metazoans during the Early to Middle Ordovician is discussed. Consistent with the correspondence between the stepwise and rapid radiation of metazoans and the abrupt reduction in the number of microbialites between the late Early Ordovician and the early Middle Ordovician, fossils of benthonic grazing gastropods (Ecculiomphalus) were found in the stromatolites and thrombolite of the study area. It is believed that the gradual reduction in microbialites was related to the rapid increase in the abundance of metazoans. Grazers not only grazed on the microorganisms that formed stromatolites, resulting in a continuous reduction in the number of stromatolites, but also disrupted the growth state of the stromatolites, resulting in the formation of unique bioturbated thrombolites in the study area. Hydrocarbon potential analysis shows that the microbialites in the Nanjinguan Formation represent better source rocks than those in the other formations.